BAM-filtration - BAM File Filtration for Sequencing Data Analysis
Performs data cleaning and removal operations to create filtered BAM files by removing artifacts
Tags
Updated: 2026-02-14Capabilities
Typical Inputs
Typical Outputs
What this skill does
- check blacklist file availability
- initialize project directory
- discover input BAM files
- perform filtration tasks
- create filtered BAM files
Inputs
- coordinate-sorted BAM files
- read group information
- blacklist file
Outputs
- filtered BAM files
- BAM index files
- temporary files
Requirements
- coordinate-sorted BAMs
- read group information in BAMs
- blacklist file availability