bio-alignment-pairwise - Perform pairwise sequence alignment
Align two DNA, RNA, or protein sequences, score similarity, and identify global or local matches using Biopython.
Tags
Updated: 2026-10-16Capabilities
Typical Outputs
What this skill does
- Align two sequences
- Configure alignment scoring
- Select global or local modes
- Retrieve optimal alignments
- Calculate alignment scores
- Extract alignment coordinates
- Count identities and gaps
Inputs
- Two DNA, RNA, or protein sequences
- Alignment mode
- Scoring parameters
- Substitution matrix
Outputs
- Alignment objects
- Alignment scores
- Aligned sequences
- Alignment coordinates
- Identity and gap counts
- Percent identity
Requirements
- Python environment
- Biopython 1.83 or later
- Bio.Align module