bio-methylation-dmr-detection - DMR Detection for Methylation Analysis
Detect differentially methylated regions using methylKit, bsseq, and DMRcate methods
Tags
Updated: 2026-03-10Capabilities
Typical Inputs
Typical Outputs
What this skill does
- read methylation data
- filter coverage data
- create genomic tiles
- calculate differential methylation
- detect DMR regions
- annotate DMRs with genes
- visualize DMR tracks
- merge adjacent DMRs
- export DMR files
Inputs
- coverage files
- sample metadata
- genome assembly
- treatment conditions
- gene annotations
Outputs
- DMR list
- annotated DMRs
- DMR visualization tracks
- BED files
- CSV files
- GFF3 files
Requirements
- R environment
- methylKit package
- bsseq package
- DMRcate package
- multicore support