bio-pdb-structure-navigation - Navigate Protein Structure Hierarchy
Navigate protein structure hierarchy using Biopython SMCRA model
Tags
Updated: 2026-05-28Typical Inputs
Typical Outputs
What this skill does
- parse PDB files
- access models
- access chains
- access residues
- access atoms
- iterate models
- iterate chains
- iterate residues
- iterate atoms
- get full identifiers
- extract polypeptide sequences
- convert residue names
- check children
- get parent entity
- handle disordered atoms
- handle disordered residues
Inputs
- PDB file
Outputs
- protein sequence
- atom coordinates
- entity count
Requirements
- BioPython 1.83+
- Python environment