bio-reporting-rmarkdown-reports - Bioinformatics Reports with R Markdown
Create bioinformatics analysis reports with code, results, and visualizations in HTML, PDF, or Word format.
Tags
Updated: 2026-03-10Capabilities
Typical Inputs
Typical Outputs
What this skill does
- create R Markdown reports
- generate HTML documents
- generate PDF documents
- generate Word documents
- include code in reports
- include tables in reports
- include figures in reports
- render reports with parameters
- create interactive tables
- create data visualizations
- embed R code inline
- apply custom CSS styling
- cache R computations
- create child documents
Inputs
- R Markdown file
- count data file
- metadata file
- report parameters
- R code
- custom CSS file
Outputs
- HTML document
- PDF document
- Word document
- formatted tables
- generated figures
- analysis reports
Requirements
- R environment
- R Markdown package
- knitr package
- LaTeX engine for PDF
- R packages (DESeq2, tidyverse, etc.)