bio-ribo-seq-translation-efficiency - Calculate Translation Efficiency from Ribo-seq and RNA-seq Data
Calculate translation efficiency as the ratio of ribosome occupancy to mRNA abundance
Tags
Updated: 2026-03-09Capabilities
Typical Inputs
Typical Outputs
What this skill does
- calculate translation efficiency
- compare translational regulation
- identify translation changes
- analyze ribo-seq data
- analyze rna-seq data
Inputs
- Ribo-seq BAM files
- RNA-seq BAM files
- GTF annotation file
- sample information
- count matrices
Outputs
- translation efficiency values
- differential TE analysis results
- statistical reports
Requirements
- Ribo-seq data
- RNA-seq data
- gene annotation
- computational environment