biomcp-server - Deploy and operate BioMCP server for biomedical database queries
Deploy and operate the BioMCP server for querying biomedical databases via MCP-compatible clients
Tags
Updated: 2026-02-12Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Execute PubMed/PMC literature queries
- Map text to entities via PubTator3
- Retrieve ClinicalTrials.gov metadata
- Fetch genomic variant summaries
Inputs
- MCP-compatible clients
- Biomedical databases
- API keys and environment secrets
Outputs
- PubMed/PMC search results
- PubTator3 annotations
- ClinicalTrials.gov data
- Genomic variant information
Requirements
- Python environment
- MCP-compliant client
- API keys for data sources
- Docker Compose or uv/pip installation