collect-care-guidelines - Collect PubMed clinical practice guidelines for disorders
Searches PubMed for recent clinical practice guidelines for dismech disorders and exports citation tables for phenotype gap mining.
Tags
Updated: 2026-09-17Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Search PubMed for practice guidelines
- Prioritize disorders by guideline count
- Fetch guideline citation metadata
- Export tab-delimited citation tables
- Filter discovery records by disorder rarity
Inputs
- Disorder names and MONDO labels
- Lookback window and limit parameters
- NCBI API key
- Disorder JSONL discovery records
Outputs
- JSONL discovery records
- Tab-delimited citation TSV tables
Requirements
- Python runtime with PyYAML library
- NCBI E-utilities network access