cosmic-database - Access and download COSMIC cancer genomics database files
Provides authentication and download access to COSMIC somatic mutations, Cancer Gene Census, mutational signatures, and structural variant data.
Tags
Updated: 2026-09-23Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Download somatic mutation data
- Download Cancer Gene Census
- Retrieve mutational signature profiles
- Download gene fusion data
- Retrieve copy number alterations
- Download drug resistance mutations
- Get common file paths
Inputs
- COSMIC user credentials
- Data type or file path
- Genome assembly version
Outputs
- Downloaded TSV data files
- Downloaded CSV data files
- Downloaded VCF variant files
Requirements
- COSMIC registered account
- Python requests library
- Python pandas library