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deepchem - Molecular machine learning with DeepChem

Load molecular and biological data, generate features, train models, evaluate predictions, and run benchmark workflows with DeepChem.

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Updated: 2026-10-03

Capabilities

Typical Inputs

Typical Outputs

What this skill does

  • Load molecular datasets
  • Featurize molecules and sequences
  • Split datasets by scaffold
  • Train molecular ML models
  • Run MoleculeNet benchmarks
  • Fine-tune pretrained models
  • Evaluate model predictions
  • Predict molecular properties

Inputs

  • Molecular data files
  • SMILES strings
  • SDF files
  • Protein or DNA sequences
  • Task definitions
  • Model configurations
  • Pretrained model identifiers

Outputs

  • Molecular features
  • Processed datasets
  • Trained models
  • Property predictions
  • Evaluation metrics

Requirements

  • Python environment
  • DeepChem library

Source

  • Spec: SKILL.md

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molecular machine learning
cheminformatics
drug discovery
property prediction
graph neural networks
MoleculeNet
Load molecular datasets
Featurize molecules and sequences
Split datasets by scaffold
Train molecular ML models
Molecular data files
SMILES strings
SDF files
Molecular features
Processed datasets
Trained models