histolab - Process whole-slide images into tissue tiles
Processes whole-slide images by detecting tissue, extracting tiles, applying preprocessing filters, and preparing datasets for analysis.
Tags
Updated: 2026-10-08Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Load whole-slide images
- Access slide metadata
- Generate slide thumbnails
- Detect tissue regions
- Extract image tiles
- Apply preprocessing filters
- Visualize tile locations
- Prepare analysis datasets
Inputs
- Whole-slide image files
- Tile extraction parameters
- Tissue masks
- Image filters
- Scoring functions
- Output directory
Outputs
- Extracted tile images
- Tissue masks
- Slide thumbnails
- Tile extraction reports
- Visualization figures
Requirements
- Python environment
- Installed histolab package