hmdb-database - Access Human Metabolome Database
Search and retrieve metabolite data from HMDB including chemical properties, biomarker data, and spectra.
Tags
Updated: 2026-03-26Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Search metabolites by name
- Search metabolites by ID
- Search metabolites by structure
- Search by molecular weight
- Retrieve chemical properties
- Access biomarker data
- Query NMR spectra
- Query MS spectra
- Browse metabolic pathways
- Download datasets
- Match spectra
Inputs
- Metabolite name
- Metabolite ID
- Molecular structure
- Molecular weight
- NMR spectra
- MS spectra
- Disease name
- Pathway name
- Specimen type
Outputs
- Metabolite details
- Chemical properties
- Biomarker associations
- Spectra reference data
- Pathway information
- Downloadable XML files
- Downloadable CSV files
- Downloadable SDF files
Requirements
- Academic or non-commercial use license
- Commercial use permission required
- Citation required for data use