hmdb-database - Access human metabolome database for metabolite research
Search, retrieve, and download human metabolite data including chemical properties, biomarker associations, spectra, and pathways.
Tags
Updated: 2026-09-19Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Search metabolites by text query
- Search metabolites by chemical structure
- Search metabolites by spectral data
- Retrieve chemical and biological data
- Download metabolite datasets
- Query database using R package
Inputs
- Metabolite names or identifiers
- Chemical structures or SMILES
- NMR or MS spectral data
- Biological specimen types
- Disease or pathway queries
Outputs
- Metabolite chemical properties
- Biomarker and clinical data
- NMR and MS spectra
- Metabolic pathway information
- Downloaded XML, SDF, CSV files
Requirements
- Internet connection for web access
- R environment for hmdbQuery package
- Permission for commercial dataset usage