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natural-product-classifier-substitution - Substitute NPClassifier for ClassyFire in ConCISE

Substitutes NPClassifier for ClassyFire ontology assignments in ConCISE consensus classification when GNPS ClassyFire data is unavailable.

Tags

Updated: 2026-09-20
metabolomicsconcisenpclassifiergnpssiriuslc-ms

Capabilities

Toggle NPClassifier mode in ConCISE CLIDerive NPClassifier ontologies from annotationsGenerate consensus classification outputsCompute consensus confidence metrics

Typical Inputs

GNPS task ID or spectral library match fileCANOPUS predictions file canopus_summary.tsvGNPS feature networking file Node_info.tsv

Typical Outputs

Consensus classification file with NPClassifier ontologiesTaxonomic level consensus confidence metrics

What this skill does

  • Toggle NPClassifier mode in ConCISE CLI
  • Derive NPClassifier ontologies from annotations
  • Generate consensus classification outputs
  • Compute consensus confidence metrics

Inputs

  • GNPS task ID or spectral library match file
  • CANOPUS predictions file canopus_summary.tsv
  • GNPS feature networking file Node_info.tsv

Outputs

  • Consensus classification file with NPClassifier ontologies
  • Taxonomic level consensus confidence metrics

Requirements

  • Python 3 environment with ConCISE CLI or GUI
  • Input structural annotations including SMILES or InChIKey

Source

  • Spec: SKILL.md

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