omero-integration - OMERO Microscopy Data Management
Access and manage microscopy images and data via OMERO Python API
Tags
Updated: 2026-05-09Capabilities
Typical Inputs
Typical Outputs
What this skill does
- connect to OMERO server
- manage connection session
- list projects
- retrieve datasets
- access images
- query screening data
- add tags
- create annotations
- attach files
- set metadata
- extract pixel data
- generate thumbnails
- create projections
- modify rendering settings
- create ROIs
- draw ROI shapes
- analyze intensities
- export ROI coordinates
- store measurements
- create tables
Inputs
- OMERO server credentials
- OMERO server host
- OMERO server port
- session ID
- project ID
- dataset ID
- image ID
- screening data
- ROI coordinates
- annotation files
Outputs
- project list
- dataset list
- image data
- pixel arrays
- thumbnail images
- ROI shapes
- intensity measurements
- OMERO tables
- annotation data
- derived images
- analysis results
Requirements
- Python 3.7+
- Zeroc Ice 3.6+
- OMERO server access
- omero-py library