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opencv-bioimage-analysis - Analyze biological images with OpenCV

Preprocess, segment, measure, and analyze biological images and microscopy video with OpenCV.

Tags

Updated: 2026-09-30
OpenCVbio-image analysiscomputer visionmicroscopyimage preprocessingsegmentationcontour detectionvideo processing

Capabilities

Read biological imagesConvert color spacesEnhance image contrastApply image filters

Typical Inputs

Biological image filesMicroscopy video filesBinary masks

Typical Outputs

Processed image filesBinary segmentation masksDetected contours

What this skill does

  • Read biological images
  • Convert color spaces
  • Enhance image contrast
  • Apply image filters
  • Threshold grayscale images
  • Detect image contours
  • Measure contour features
  • Refine binary masks
  • Process microscopy video
  • Compute optical flow

Inputs

  • Biological image files
  • Microscopy video files
  • Binary masks
  • Processing parameters

Outputs

  • Processed image files
  • Binary segmentation masks
  • Detected contours
  • Contour measurements
  • Video processing results
  • Object counts

Requirements

  • Python environment
  • opencv-python package
  • numpy package
  • matplotlib package
  • opencv-contrib-python for extra modules

Source

  • Spec: SKILL.md

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