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peak-border-center-estimation - Estimate LC-HRMS chromatographic peak borders and centers

Estimate chromatographic peak borders and centers from LC-HRMS profile mode data using smoothing and gradient-descent algorithms.

Tags

Updated: 2026-09-18

Capabilities

Typical Inputs

Typical Outputs

What this skill does

  • Apply signal smoothing filter
  • Execute gradient descent algorithm
  • Locate chromatographic peak maxima
  • Estimate peak center coordinates
  • Estimate peak border boundaries

Inputs

  • LC-HRMS chromatogram matrix data
  • Smoothing filter parameters
  • Gradient-descent search parameters

Outputs

  • Detected chromatographic peak centers
  • Peak border estimates
  • Peak properties

Requirements

  • Python
  • PeakBot
  • TensorFlow
  • CUDA GPU

Source

  • Spec: SKILL.md
mass-spectrometry
lc-hrms
chromatography
peak-detection
gradient-descent
Apply signal smoothing filter
Execute gradient descent algorithm
Locate chromatographic peak maxima
Estimate peak center coordinates
LC-HRMS chromatogram matrix data
Smoothing filter parameters
Gradient-descent search parameters
Detected chromatographic peak centers
Peak border estimates
Peak properties