picard-dependent-cohorts - Build derived cohorts in Picard study repositories
Builds derived cohorts using templated builder functions on CohortManifest from existing registered base cohorts.
Tags
Updated: 2026-09-18Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Collect derived cohort scoping requirements
- Confirm existence of base cohorts
- Write R builder code to script
- Generate derived cohort delivery report
Inputs
- Cohort manifest SQLite database
- R cohort builder script
- Registered base cohort entries
Outputs
- Updated build_dependent_cohorts.R script file
- Derived cohort delivery report
Requirements
- Registered base cohorts in manifest
- Loaded CohortManifest object in R
- Sourced builder script via main.R