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protocol-verification - Simulate and Analyze Opentrons Protocols for Verification

Simulate and analyze Opentrons protocols to verify correctness, generating runlogs and structured JSON reports for protocol validation.

Tags

Updated: 2026-06-30

Capabilities

Typical Inputs

Typical Outputs

What this skill does

  • simulate protocol execution
  • analyze protocol with JSON output
  • detect runtime parameters in protocol
  • pass custom labware definitions
  • pass primitive RTP values
  • pass CSV RTP files
  • run snapshot tests for protocols

Inputs

  • Protocol Python files
  • Custom labware JSON definitions
  • CSV files for RTP inputs
  • Primitive RTP parameter values

Outputs

  • Human-readable runlog of protocol commands
  • Structured JSON analysis report
  • Error messages and diagnostics

Requirements

  • api/ venv must exist (run make -C api setup)
  • Commands must run from monorepo root
  • opentrons_simulate binary available
  • opentrons.cli analyze module available
  • Do not use uv run for one-off calls

Source

  • Spec: SKILL.md
opentrons
protocol verification
simulation
analysis
lab automation
runtime parameters
simulate protocol execution
analyze protocol with JSON output
detect runtime parameters in protocol
pass custom labware definitions
Protocol Python files
Custom labware JSON definitions
CSV files for RTP inputs
Human-readable runlog of protocol commands
Structured JSON analysis report
Error messages and diagnostics