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pymol-setup - Configure PyMOL Integration with Claude

Install and configure pymol-agent-bridge to connect Claude with PyMOL via local socket

Tags

Updated: 2026-05-09

Capabilities

Typical Inputs

Typical Outputs

What this skill does

  • check existing installations
  • detect virtual environments
  • install pymol-agent-bridge
  • configure PyMOL connection
  • test PyMOL connection
  • generate setup report

Inputs

  • Python environment
  • PyMOL installation
  • project directory

Outputs

  • pymol-agent-bridge installation
  • PyMOL socket plugin
  • connection status
  • setup report

Requirements

  • Python 3.10+
  • PyMOL installation
  • internet connection

Source

  • Spec: SKILL.md

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molecular-visualization
integration-setup
configuration
check existing installations
detect virtual environments
install pymol-agent-bridge
configure PyMOL connection
Python environment
PyMOL installation
project directory
pymol-agent-bridge installation
PyMOL socket plugin
connection status