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quantitative-biologist - Analyze mechanistic models and live-cell data.

Applies quantitative biology methods to mechanistic models, parameter inference, identifiability, uncertainty, and live-cell imaging analysis.

Tags

Updated: 2026-10-04
quantitative biologysystems biologyODE modelingidentifiabilityBayesian inferencelive-cell microscopy

Capabilities

Classify biological modeling tasksCheck model units and balancesAnalyze structural identifiabilityEstimate parameters and uncertainties

Typical Inputs

Mechanistic model specificationsSBML or PEtab filesExperimental measurements

Typical Outputs

Modeling analysesParameter estimatesIdentifiability diagnostics

What this skill does

  • Classify biological modeling tasks
  • Check model units and balances
  • Analyze structural identifiability
  • Estimate parameters and uncertainties
  • Design informative experiments
  • Validate imaging pipelines

Inputs

  • Mechanistic model specifications
  • SBML or PEtab files
  • Experimental measurements
  • Imaging data
  • Experimental design constraints
  • Prior knowledge

Outputs

  • Modeling analyses
  • Parameter estimates
  • Identifiability diagnostics
  • Uncertainty assessments
  • Experimental design recommendations
  • Image-derived feature tables

Requirements

    Source

    • Spec: SKILL.md

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