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r-reproducibility-guide - Create Reproducible Research Workflows in R

Guides creating reproducible research workflows in R using RMarkdown, Quarto, renv package management, and automated pipelines.

Tags

Updated: 2026-09-16

Capabilities

Typical Inputs

Typical Outputs

What this skill does

  • Organize project directory structures
  • Manage package versions using renv
  • Create reports with RMarkdown and Quarto
  • Automate build pipelines using Makefile
  • Track execution dependencies using targets

Inputs

  • Raw research data files
  • R analysis scripts
  • RMarkdown and Quarto source files
  • renv lockfile

Outputs

  • Processed datasets
  • Compiled documents and reports
  • Generated figures and tables
  • renv lockfile

Requirements

  • R language environment
  • renv R package
  • RMarkdown or Quarto CLI

Source

  • Spec: SKILL.md
R programming
RMarkdown
Quarto
renv
reproducibility
computational reproducibility
Organize project directory structures
Manage package versions using renv
Create reports with RMarkdown and Quarto
Automate build pipelines using Makefile
Raw research data files
R analysis scripts
RMarkdown and Quarto source files
Processed datasets
Compiled documents and reports
Generated figures and tables