reactome-database - Query Reactome Pathway Database API
Query Reactome REST API for pathway analysis, enrichment, and gene mapping
Tags
Updated: 2026-03-25Capabilities
Typical Inputs
Typical Outputs
What this skill does
- retrieve pathway information
- query pathway data
- perform enrichment analysis
- analyze expression data
- map genes to pathways
- explore molecular interactions
- get database version
- submit gene identifiers
- retrieve analysis results
- generate visualization URLs
Inputs
- gene identifiers
- protein identifiers
- pathway IDs
- expression data files
- TSV format data
- entity IDs
Outputs
- pathway analysis results
- enriched pathway lists
- JSON responses
- analysis tokens
- visualization URLs
Requirements
- Internet connection
- Python environment
- Reactome API access