reactome-database - Query Reactome pathway database via REST API
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, and molecular interactions
Tags
Updated: 2026-03-25Capabilities
Typical Inputs
Typical Outputs
What this skill does
- query pathway data
- query specific entity
- retrieve pathway information
- get database version
- get participating molecules
- perform enrichment analysis
- analyze expression data
- map genes to pathways
- compare pathways across species
- retrieve analysis results
Inputs
- gene or protein identifiers
- gene expression data
- pathway identifiers
- identifier text list
- TSV format expression file
Outputs
- pathway information
- enriched pathways
- molecular entities
- analysis summary
- visualization URL
Requirements
- network access
- Python client
- reactome2py