rippp-candidate-structure-generation - Generate PTM variants of RiPP precursor peptides
Enumerates chemical space of PTM variants for RiPP precursor peptides to build a candidate structure database for downstream spectral matching.
Tags
Updated: 2026-09-20Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Enumerate PTM variants of precursor peptides
- Build class-specific RiPP structure databases
- Map precursor metadata to candidates
Inputs
- Precursor peptide sequences
- RiPP class label
- Class-specific modification rule set
Outputs
- Per-class RiPP structure database file
- Enumerated candidate structures with PTM annotations
- Precursor-structure mapping metadata
Requirements
- MetaMiner or NPDtools 2.5.0
- Python environment