smri-skill - Structural MRI processing and feature extraction
Plans structural MRI processing for T1w, T2w, and FLAIR data and delegates execution to tool skills.
Tags
Updated: 2026-10-03Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Identify MRI input formats
- Plan structural MRI workflows
- Delegate processing steps
- Extract anatomical features
- Segment white matter lesions
- Export results to DICOM
Inputs
- DICOM series
- NIfTI images
- BIDS dataset
- Available MRI modalities
- Processing task
- Optional T2w images
- Optional FLAIR images
Outputs
- Numbered execution plan
- Brain masks
- Bias-corrected images
- Tissue segmentation maps
- MNI transforms
- FreeSurfer surfaces
- Cortical parcellations
- Morphometry tables
- WMH masks
- ROI statistics CSV files
- BIDS derivatives
- DICOM series
- smri_output folder
Requirements
- Delegated tool skills
- claw-shell
- FreeSurfer installation and license
- FSL installation for FSL workflows
- Docker readiness for WMH workflows