universal-single-cell-annotator - Universal Single-Cell Annotator for RNA-seq Data Analysis
A unified interface for annotating single-cell RNA-seq data using Marker Genes, Deep Learning (CellTypist), or LLMs.
Tags
Updated: 2026-02-12Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Score cells using marker genes
- Transfer labels with CellTypist
- Interpret clusters with LLMs
Inputs
- Single-cell RNA-seq data
- Marker gene lists
- CellTypist models
- LLM access
Outputs
- Annotated cell type labels
- Updated AnnData object
Requirements
- Python 3.9+ environment
- Scanpy library
- Optional CellTypist library