universal-single-cell-annotator - Universal Single-Cell Annotator for RNA-seq Data Annotation
Annotates single-cell RNA-seq data using marker genes, deep learning, or LLM reasoning
Tags
Updated: 2026-02-12Capabilities
Typical Inputs
Typical Outputs
What this skill does
- score cells with marker genes
- transfer labels from celltypist
- extract markers for LLM interpretation
Inputs
- single-cell RNA-seq data
- gene marker lists
- AnnData object
Outputs
- annotated cell type predictions
- updated adata.obs columns
- cell type labels
Requirements
- Python 3.9+
- scanpy library
- AnnData format