validated-link-enrichment-analysis - Assess GCF-MF link predictions with Fisher exact test
Quantifies whether high-scoring GCF-MF link predictions are enriched for experimentally validated pairs using Fisher exact test.
Tags
Updated: 2026-09-21Capabilities
What this skill does
- Apply score percentile thresholds
- Calculate validated link proportions
- Perform Fisher exact test
- Compare scoring strategy enrichment
Inputs
- Scored GCF-MF link predictions
- Curated validated GCF-MF pairs
Outputs
- Validated link proportions
- Fisher exact test p-values
- Enrichment contingency tables
Requirements
- Curated validated reference links
- Standardised scoring functions
- At least 50 validated links
