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validated-link-proportional-comparison - Compare validated GCF-MF link enrichment across scores.

Compares enrichment of validated GCF-MF links across scoring categories using proportional analysis and Fisher exact tests.

Tags

Updated: 2026-09-21

Capabilities

Typical Inputs

Typical Outputs

What this skill does

  • Partition links into scoring categories
  • Calculate validated link proportions
  • Compute Fisher exact test p-values
  • Tabulate dataset and pooled results

Inputs

  • GCF-MF link scores
  • Ground-truth validated links list
  • Link partition thresholds

Outputs

  • Validated link proportions per category
  • Fisher exact test p-values
  • Pooled summary table

Requirements

  • At least two independent scoring functions
  • Ground-truth binary validation labels

Source

  • Spec: SKILL.md
metabolomics
genomics
Fisher exact test
link scoring
NPLinker
Partition links into scoring categories
Calculate validated link proportions
Compute Fisher exact test p-values
Tabulate dataset and pooled results
GCF-MF link scores
Ground-truth validated links list
Link partition thresholds
Validated link proportions per category
Fisher exact test p-values
Pooled summary table