bio-chip-seq-motif-analysis - ChIP-seq motif discovery and enrichment
Identify DNA sequence motifs enriched in ChIP-seq or ATAC-seq peaks using HOMER and MEME-ChIP
Tags
Updated: 2026-05-11Capabilities
Typical Inputs
What this skill does
- identify enriched motifs
- discover de novo motifs
- scan genome for motifs
- compare motifs to database
- create custom motifs
- extract peak sequences
- parse motif results
- visualize motif logos
Inputs
- ChIP-seq peaks
- ATAC-seq peaks
- genomic sequences
- motif database
- background regions
- genome reference
Outputs
- discovered motifs
- motif enrichment statistics
- motif annotation files
- sequence logos
- motif location files
Requirements
- HOMER installed
- MEME Suite installed
- bedtools installed
- conda environment
- configured genome
- CPU resources