Skills tagged "motif analysis"

archr - Analyze scATAC-seq data with ArchR in R

single-cell ATAC-seq R ArchR epigenomics

★ 98 · Updated 2026-10-01

Runs R-based scATAC-seq workflows including Arrow files, dimensionality reduction, clustering, gene scores, peak calling, motif analysis, chromVAR, footprinting, integration, and trajectories.

⚙ Create Arrow files ⚙ Infer doublets ⚙ Run iterative LSI

bio-chip-seq-motif-analysis - ChIP-seq motif discovery and enrichment

bioinformatics ChIP-seq ATAC-seq motif analysis

★ 22 · Updated 2026-05-11

Identify DNA sequence motifs enriched in ChIP-seq or ATAC-seq peaks using HOMER and MEME-ChIP

⚙ identify enriched motifs ⚙ discover de novo motifs ⚙ scan genome for motifs

bio-chip-seq-motif-analysis - ChIP-seq/ATAC-seq Motif Analysis

bioinformatics ChIP-seq ATAC-seq motif analysis

★ 650 · Updated 2026-05-11

Identify DNA sequence motifs enriched in genomic peak data using HOMER and MEME

⚙ find enriched motifs ⚙ compare motifs to database ⚙ scan genome for matches