bio-geo-data - Query NCBI GEO Expression Datasets
Query and access NCBI Gene Expression Omnibus datasets using Biopython Entrez module
Tags
Updated: 2026-06-30Capabilities
Typical Inputs
Typical Outputs
What this skill does
- search GEO datasets
- fetch GEO summaries
- get FTP links
- link GEO to SRA
- search by PubMed ID
- download series matrix
Inputs
- email address
- API key
- search term
- GSE accession
- PubMed ID
Outputs
- search results
- dataset summaries
- FTP links
- SRA run links
Requirements
- Biopython
- Python
- NCBI API access