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Skills tagged: gene expression

Browse skills that share this tag.

  • bio-geo-data - Query NCBI GEO Expression Datasets
    bioinformaticsgene expressionNCBIGEO

    ★ 15 · Updated 2026-06-30

    Query and access NCBI Gene Expression Omnibus datasets using Biopython Entrez module

    ⚙ search GEO datasets⚙ fetch GEO summaries⚙ get FTP links
  • bio-pathway-gsea - Gene Set Enrichment Analysis with clusterProfiler
    bioinformaticsgene expressionenrichment analysispathway analysis

    ★ 18 · Updated 2026-03-19

    Performs GSEA on ranked gene lists using clusterProfiler to detect coordinated expression changes without arbitrary cutoffs.

    ⚙ run GSEA analysis⚙ perform GO enrichment⚙ perform KEGG enrichment
  • bulk-rna-seq-batch-correction-with-combat - Bulk RNA-seq batch correction with ComBat
    RNA-seqbatch correctiondata harmonizationbioinformatics

    ★ 1,209 · Updated 2026-02-23

    Remove batch effects from merged bulk RNA-seq or microarray cohorts using omicverse's pyComBat wrapper

    ⚙ read expression matrices⚙ concatenate gene expression data⚙ run ComBat batch correction