bio-longread-qc - Long-read sequencing quality control
Generate QC reports, filter reads by length and quality, and visualize read characteristics for long-read sequencing data
Tags
Updated: 2026-03-21Capabilities
Typical Inputs
Typical Outputs
What this skill does
- generate QC reports
- filter reads by length
- filter reads by quality
- visualize read distributions
- calculate read statistics
- trim read adapters
- parse FASTQ quality
- generate plots
- calculate N50
Inputs
- FASTQ file
- BAM file
- sequencing summary file
- quality thresholds
- length thresholds
Outputs
- QC report
- filtered reads
- quality plots
- statistics file
- N50 value
- trimmed reads
Requirements
- BioPython 1.83+
- numpy 1.26+
- NanoPlot
- NanoStat
- chopper
- Python environment