bio-motif-search - Biological Sequence Motif Search
Find patterns, motifs, and subsequences in biological sequences using Biopython
Tags
Updated: 2026-06-15Capabilities
Typical Inputs
Typical Outputs
What this skill does
- find sequence patterns
- count pattern occurrences
- search with regex
- convert IUPAC patterns
- find ORFs
- find tandem repeats
- create motifs from instances
- scan sequences with PSSM
- calculate motif thresholds
- read motif files
- write motif files
Inputs
- biological sequence
- search pattern
- motif instances
- motif file
- threshold value
Outputs
- pattern positions
- pattern counts
- matched subsequences
- motif objects
- motif file
Requirements
- BioPython 1.83+
- Python environment