bio-phylo-tree-io - Phylogenetic Tree I/O with Biopython
Read, write, and convert phylogenetic tree files in Newick, Nexus, PhyloXML, and NeXML formats
Tags
Updated: 2026-03-20Typical Inputs
Typical Outputs
What this skill does
- read tree file
- write tree file
- parse tree format
- convert tree format
- serialize tree string
- validate tree format
- handle multiple trees
- iterate tree files
- find tree clade
- get tree terminals
- get branch lengths
Inputs
- Newick tree file
- Nexus tree file
- PhyloXML tree file
- NeXML tree file
- Newick string
- tree repository
Outputs
- tree file
- tree string
- tree structure
- ASCII tree diagram
- tree count
Requirements
- Python 3
- Biopython library