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OpenClaw Skills & Use Case Index

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Skills tagged: phylogenetics

Browse skills that share this tag.

  • bio-epidemiological-genomics-transmission-inference - Infer pathogen transmission networks and transmission pairs
    epidemiologygenomicstransmission-inferencetransphylo

    ★ 0 · Updated 2026-09-18

    Infer pathogen transmission networks and estimate who-infected-whom from genomic and epidemiological data using TransPhylo and distance-based algorithms.

    ⚙ Infer transmission trees using TransPhylo⚙ Prepare input data for TransPhylo⚙ Extract consensus transmission tree
  • bio-epidemiological-genomics-phylodynamics - Build time-scaled phylogenies for outbreak analysis
    phylogeneticsphylodynamicsmolecular clockoutbreak analysis

    ★ 0 · Updated 2026-03-22

    Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime for outbreak analysis

    ⚙ load Newick tree⚙ load alignment file⚙ load dates file
  • bio-epidemiological-genomics-phylodynamics - Time-scaled phylogeny and evolutionary dynamics analysis
    phylogeneticsphylodynamicsgenomicsepidemiology

    ★ 2 · Updated 2026-03-22

    Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2

    ⚙ Build time-scaled phylogenetic trees⚙ Estimate molecular clock rates⚙ Reconstruct ancestral sequences
  • bio-epidemiological-genomics-phylodynamics - Time-scaled phylogenies and evolutionary dynamics
    phylogeneticsepidemiologymolecular clockoutbreak analysis

    ★ 12 · Updated 2026-03-22

    Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis

    ⚙ construct time-scaled phylogenies⚙ estimate divergence times⚙ estimate molecular clock rates
  • bio-epidemiological-genomics-phylodynamics - Time-scaled phylogenies for outbreak analysis
    phylogeneticsepidemiologygenomicsmolecular clock

    ★ 359 · Updated 2026-03-22

    Construct time-scaled phylogenies and infer evolutionary dynamics

    ⚙ build time-scaled tree⚙ estimate divergence times⚙ estimate molecular clock rates
  • bio-epidemiological-genomics-phylodynamics - Time-scaled Phylogeny and Evolutionary Dynamics Analysis
    epidemiologygenomicsphylogeneticsoutbreak analysis

    ★ 1,207 · Updated 2026-03-22

    Construct time-scaled phylogenies and infer evolutionary dynamics using TreeTime and BEAST2 for outbreak analysis

    ⚙ build time-scaled trees⚙ estimate clock rates⚙ estimate divergence times
  • bio-phylo-tree-io - Phylogenetic Tree File I/O
    bioinformaticsphylogeneticstree-ioNewick

    ★ 18 · Updated 2026-03-20

    Read, write, and convert phylogenetic tree files in Newick, Nexus, PhyloXML, and NeXML formats using Biopython Bio.Phylo

    ⚙ read tree files⚙ write tree files⚙ convert tree formats
  • bio-phylo-tree-io - Phylogenetic Tree I/O with Biopython
    phylogeneticstreebioinformaticsfile format

    ★ 602 · Updated 2026-03-20

    Read, write, and convert phylogenetic tree files in Newick, Nexus, PhyloXML, and NeXML formats

    ⚙ read tree file⚙ write tree file⚙ parse tree format