bio-read-qc-quality-reports - FASTQ Quality Reports with FastQC and MultiQC
Generate quality reports from FASTQ files using FastQC and aggregate reports with MultiQC
Tags
Updated: 2026-02-11Capabilities
Typical Inputs
Typical Outputs
What this skill does
- run FastQC analysis
- generate HTML reports
- aggregate multiple reports
- extract quality metrics
- analyze adapter content
- check sequence duplicates
- assess GC bias
Inputs
- FASTQ files
- FastQC configuration
- MultiQC configuration
- Adapter sequences
Outputs
- FastQC HTML reports
- FastQC ZIP archives
- MultiQC aggregated report
- Quality metrics tables
Requirements
- FastQC installation
- MultiQC installation
- FASTQ format files
- Command-line access