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OpenClaw Skills & Use Case Index

ClawIndex is an ecosystem-driven index of OpenClaw skills and real-world use cases.

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Skills with input: FASTQ files

Browse skills that use this input.

pysam - Genomic Data Processing Toolkit
bioinformatics genomics NGS sequencing
★ 399 · Updated 2026-06-15
Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences for NGS pipelines
⚙ read alignment files ⚙ write alignment files ⚙ fetch genomic regions
pysam - Genomic File Toolkit
bioinformatics genomics NGS alignment
★ 2 · Updated 2026-06-15
Read/write SAM/BAM/CRAM alignments, VCF/BCF variants, FASTA/FASTQ sequences for NGS data
⚙ Open alignment files ⚙ Open variant files ⚙ Open sequence files
pysam - Genomic file processing toolkit
bioinformatics genomics sequencing NGS
★ 53 · Updated 2026-06-15
Read/write genomic files, query regions, calculate coverage for NGS data
⚙ read alignment files ⚙ write alignment files ⚙ read variant files
bio-splicing-pipeline - RNA-seq Alternative Splicing Analysis Pipeline
alternative splicing RNA-seq differential analysis bioinformatics
★ 1,207 · Updated 2026-03-25
End-to-end alternative splicing analysis from FASTQ to differential splicing results
⚙ Trim FASTQ reads ⚙ Align RNA-seq reads ⚙ Perform junction QC
bio-longread-qc - Long-read sequencing data quality control
bioinformatics long-read sequencing quality control ONT
★ 0 · Updated 2026-03-21
Perform quality control on long-read sequencing data using NanoPlot, NanoStat, and chopper
⚙ read FASTQ files ⚙ read BAM files ⚙ read sequencing summary
bio-longread-qc - Long-read sequencing quality control tool
long-read sequencing quality control nanopore pacbio
★ 2 · Updated 2026-03-21
Quality control for long-read sequencing data using NanoPlot, NanoStat, and chopper
⚙ generate read length distributions ⚙ create quality score plots ⚙ calculate summary statistics
bio-read-qc-quality-reports - FASTQ Quality Reports with FastQC and MultiQC
bioinformatics quality-control fastq sequencing
★ 22 · Updated 2026-02-11
Generate quality reports from FASTQ files using FastQC and aggregate reports with MultiQC
⚙ run FastQC analysis ⚙ generate HTML reports ⚙ aggregate multiple reports
bio-read-qc-quality-reports - Generate and interpret FASTQ quality reports using FastQC and MultiQC
bioinformatics quality control sequencing FASTQ
★ 33 · Updated 2026-02-11
Generate quality reports for FASTQ files and aggregate multiple reports
⚙ run FastQC on FASTQ files ⚙ aggregate reports with MultiQC ⚙ process multiple samples
bio-read-qc-quality-reports - FASTQ Quality Analysis with FastQC and MultiQC
bioinformatics quality-control sequencing fastq
★ 650 · Updated 2026-02-11
Generate and interpret quality reports from FASTQ files using FastQC and MultiQC
⚙ run FastQC analysis ⚙ generate MultiQC reports ⚙ extract quality metrics
bio-read-qc-quality-reports - FastQC and MultiQC Sequencing Quality Analysis
quality control sequencing analysis bioinformatics
★ 1,207 · Updated 2026-02-11
Generate and aggregate quality reports for FASTQ files using FastQC and MultiQC
⚙ generate quality reports with FastQC ⚙ aggregate reports with MultiQC ⚙ assess per-base quality
sc-best-practices-auto - Single-Cell Best Practices Auto-Discovery Tool
single-cell bioinformatics documentation automation
★ 22 · Updated 2026-02-11
Automatically discovers and crawls single-cell analysis best practices documentation, HTML/MD files, and code blocks
⚙ discover documentation indexes ⚙ crawl HTML content ⚙ extract MD files