genomeark-aws - Access GenomeArk AWS S3 for VGP Data
Access and navigate GenomeArk AWS S3 bucket containing VGP assemblies and quality control data
Tags
Updated: 2026-03-24Capabilities
Typical Inputs
Typical Outputs
What this skill does
- read genome assemblies
- read QC metrics
- read meryl histograms
- extract assembly dates
- list species directories
- validate data paths
Inputs
- GenomeArk S3 bucket
- species name
- ToLID
- assembly type
- assembly version
- data type
- FASTA filename
Outputs
- genome assemblies
- GenomeScope metrics
- BUSCO metrics
- Merqury metrics
- meryl histograms
- assembly dates
Requirements
- network access
- AWS CLI