hmdb-database - HMDB Metabolite Database Access
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.
Tags
Updated: 2026-03-26Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Search metabolites by name
- Search metabolites by ID
- Search by structure
- Retrieve chemical properties
- Retrieve biomarker data
- Retrieve NMR spectra
- Retrieve MS spectra
- Download datasets
- Access pathway information
- Match LC-MS spectra
- Match GC-MS spectra
- Search NMR spectra
Inputs
- Metabolite name
- HMDB ID
- Molecular structure
- SMILES string
- InChI string
- Molecular weight
- Biological specimen type
- Disease name
Outputs
- Metabolite information
- Chemical properties
- Biomarker associations
- NMR spectra data
- MS spectra data
- Pathway information
- Dataset files
- Protein sequences
Requirements
- Academic license for non-commercial use
- Commercial permission for commercial use
- Web access
- R/Bioconductor for programmatic access