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Skills tagged: pathway analysis

Browse skills that share this tag.

  • hmdb-database - HMDB Metabolite Database Access
    metabolomicsmetabolite databasebiochemistryspectroscopy

    ★ 0 · Updated 2026-03-26

    Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

    ⚙ Search metabolites by name⚙ Search metabolites by ID⚙ Search by structure
  • hmdb-database - Access Human Metabolome Database for metabolite searches and information retrieval
    metabolomicsdatabasemetaboliteschemical compounds

    ★ 18 · Updated 2026-03-26

    Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, and pathways.

    ⚙ Search metabolites by name⚙ Search metabolites by ID⚙ Search metabolites by structure
  • reactome-database - Reactome Pathway Database & Analysis
    pathway analysissystems biologygenomicsbioinformatics

    ★ 1 · Updated 2026-03-25

    Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping via Python client

    ⚙ query pathway information⚙ query specific entities⚙ get participating molecules
  • reactome-database - Query Reactome Pathway Database
    pathway analysisbioinformaticsmolecular interactionssystems biology

    ★ 18 · Updated 2026-03-25

    Query Reactome REST API for pathway analysis, gene-pathway mapping, and molecular interactions

    ⚙ query database version⚙ retrieve pathway information⚙ query specific entity
  • reactome-database - Query Reactome Pathway Database
    pathway analysissystems biologygene enrichmentmolecular interactions

    ★ 21 · Updated 2026-03-25

    Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, and molecular interactions

    ⚙ Query pathway information⚙ Retrieve pathway hierarchies⚙ Query specific entities
  • metabolomics - Metabolomics Data Analysis
    metabolomicspathway analysisbiochemistryflux analysis

    ★ 3 · Updated 2026-03-22

    Apply metabolomics analysis strategies to interpret metabolic pathways and biochemical mechanisms

    ⚙ identify metabolites⚙ analyze pathways⚙ calculate flux
  • bio-metagenomics-functional-profiling - Metagenomic Functional Profiling Tool
    HUMAnN3CLIfunctional profilingmetagenomics

    ★ 18 · Updated 2026-03-20

    Profile functional potential of metagenomes using HUMAnN3 to obtain pathway and gene family abundances.

    ⚙ run HUMAnN3⚙ download databases⚙ process samples
  • bio-metagenomics-functional-profiling - Metagenomic Functional Profiling with HUMAnN3
    metagenomicsfunctional profilingHUMAnN3pathway analysis

    ★ 602 · Updated 2026-03-20

    Profile functional potential of metagenomic samples using HUMAnN3 to get pathway and gene family abundances

    ⚙ analyze metagenomic samples⚙ calculate pathway abundances⚙ count gene families
  • bio-pathway-gsea - Gene Set Enrichment Analysis with clusterProfiler
    bioinformaticsgene expressionenrichment analysispathway analysis

    ★ 18 · Updated 2026-03-19

    Performs GSEA on ranked gene lists using clusterProfiler to detect coordinated expression changes without arbitrary cutoffs.

    ⚙ run GSEA analysis⚙ perform GO enrichment⚙ perform KEGG enrichment