hmdb-database - Access Human Metabolome Database for metabolite searches and information retrieval
Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, and pathways.
Tags
Updated: 2026-03-26Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Search metabolites by name
- Search metabolites by ID
- Search metabolites by structure
- Search metabolites by substructure
- Search metabolites by molecular weight
- Search metabolites by SMILES
- Search metabolites by InChI
- Search metabolites by spectrum
- Search metabolites by disease
- Search metabolites by pathway
- Search metabolites by specimen type
- Retrieve chemical properties
- Retrieve biological information
- Retrieve clinical data
- Retrieve spectral data
- Download metabolite datasets
- Download protein sequences
- Download spectra data
- Download pathway data
Inputs
- Metabolite name
- HMDB ID
- SMILES string
- InChI string
- Molecular weight
- Chemical structure
- Spectrum data
- Disease name
- Pathway name
- Specimen type
Outputs
- Chemical properties
- Biological information
- Clinical data
- Spectral data
- Metabolite dataset files
- Protein sequence files
- Pathway information
Requirements
- Web access to hmdb.ca
- Internet connection
- Non-commercial use for free access