reactome-database - Query Reactome Pathway Database
Query Reactome REST API for pathway analysis, gene-pathway mapping, and molecular interactions
Tags
Updated: 2026-03-25Capabilities
Typical Inputs
Typical Outputs
What this skill does
- query database version
- retrieve pathway information
- query specific entity
- get participating molecules
- perform overrepresentation analysis
- analyze expression data
- map genes to pathways
- project species identifiers
- construct visualization URLs
Inputs
- gene identifiers
- protein identifiers
- expression data TSV
- pathway IDs
- entity IDs
Outputs
- pathway data
- enriched pathways
- statistical metrics
- analysis tokens
- visualization URLs
Requirements
- network connection
- HTTP requests support