reactome-database - Query Reactome Pathway Database
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping, and molecular interactions
Tags
Updated: 2026-03-25Capabilities
Typical Inputs
Typical Outputs
What this skill does
- Query pathway information
- Retrieve pathway hierarchies
- Query specific entities
- Get participating molecules
- Perform enrichment analysis
- Analyze expression data
- Compare species pathways
- Map genes to pathways
- Submit gene lists
- Retrieve analysis results
Inputs
- Gene identifiers
- Protein identifiers
- Expression data files
- Pathway IDs
- Entity IDs
- Gene lists
- TSV data files
Outputs
- Pathway information
- Analysis results
- Statistical metrics
- Pathway hierarchies
- Molecule lists
- Analysis tokens
Requirements
- Internet connection
- REST API access
- Supported identifier formats