reactome-database - Reactome Pathway Database & Analysis
Query Reactome REST API for pathway analysis, enrichment, gene-pathway mapping via Python client
Tags
Updated: 2026-03-25Capabilities
Typical Inputs
Typical Outputs
What this skill does
- query pathway information
- query specific entities
- get participating molecules
- retrieve database version
- perform overrepresentation analysis
- analyze expression data
- map identifiers to pathways
- compare pathways across species
- get analysis results
Inputs
- gene identifiers
- protein identifiers
- expression data files
- pathway identifiers
- entity identifiers
Outputs
- pathway information
- enrichment analysis results
- molecular interaction data
- analysis tokens
- visualization URLs
Requirements
- internet connection
- Python environment
- HTTP access