simo-multiomics-integration-agent - Multi-omics Spatial Integration
Spatial integration of multi-omics datasets using probabilistic alignment
Tags
Updated: 2026-03-20Capabilities
Typical Inputs
Typical Outputs
What this skill does
- integrate spatial transcriptomics
- project scATAC-seq profiles
- map methylation data
- combine modalities
- assign cell types
- identify niches
- map cell states
- normalize datasets
- select features
- compute assignment probabilities
- transfer modalities
- create visualizations
- estimate uncertainty
- perform batch correction
Inputs
- spatial transcriptomics data
- single-cell RNA-seq data
- scATAC-seq data
- methylation data
- proteomics data
- spatial reference data
Outputs
- integrated spatial object
- cell type map
- chromatin accessibility map
- niche assignments
- uncertainty map
Requirements
- Python 3.10+