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Skills tagged: variant calling

Browse skills that share this tag.

  • bio-variant-calling - Variant Calling with bcftools from BAM Alignments
    variant callingbcftoolsSNP detectionindel detection

    ★ 178 · Updated 2026-06-30

    Detect SNPs and indels from aligned reads using bcftools mpileup and call pipeline, generating VCF output from BAM files.

    ⚙ Call SNPs and indels from BAM⚙ Generate pileup from aligned reads⚙ Call variants for specific regions
  • pysam - Genomic File Processing Toolkit
    genomicsbioinformaticsNGSsequencing

    ★ 359 · Updated 2026-06-15

    Read and write genomic alignment, variant, and sequence files for NGS data processing

    ⚙ read SAM/BAM/CRAM files⚙ read VCF/BCF files⚙ read FASTA/FASTQ files