anndata - Manage AnnData Objects
Manage AnnData objects for single-cell genomics and biological datasets
Tags
Updated: 2026-06-30Capabilities
Typical Inputs
Typical Outputs
What this skill does
- create AnnData object
- read h5ad file
- write h5ad file
- subset AnnData object
- filter AnnData object
- concatenate AnnData objects
- transform AnnData object
- convert data format
Inputs
- data matrix
- h5ad file
- zarr file
- CSV file
- metadata
- external data
- experiment batch
Outputs
- AnnData object
- h5ad file
- zarr file
- CSV files
- transformed data
Requirements
- Python environment
- NumPy
- pandas